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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17732945_17734951_F

Intron Information:

Intron Rank:
2
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
17732945 - 17734951
Intron Length:
2007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
AGACAAAACACAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTCCTTTAACA
Flanking Amino Acid:
QAIQTYMKMLQYNHTGTQFF
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.9
-0
1.2
50.8
41.3
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
48.7
-0
1
37
37.8
Minor 5ss
92.7
1.44
0.8
90
21.2
Minor BPS
84.5
1.08
1
88.93
27

Associated Gene:

Gene:
VASH2
Ensembl Gene ID:
ENSAPLG00000011439
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011910
17730164 - 17752121
21958