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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17735009_17751520_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
17735009 - 17751520
Intron Length:
16512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CGGCGCATGCCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GGTGCCTTGACT
Flanking Amino Acid:
FEIRKSRPLSGYLTNGQPSV
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.6
34.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
52.7
0.06
1.1
43.1
42.2
Minor 5ss
36.8
-1.5
3.3
44.3
43.6
Minor BPS
71.7
0.77
1.4
81.03
40.6

Associated Gene:

Gene:
VASH2
Ensembl Gene ID:
ENSAPLG00000011439
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011910
17730164 - 17752121
21958