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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17755508_17756641_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
17755508 - 17756641
Intron Length:
1134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCG
5'SS Class:
strong_major
3'SS Sequence:
CACTGGAGTGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTTCCTTCCACT
Flanking Amino Acid:
SHGRTEEGGSR*
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
39.3
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
58.3
0.19
1.1
50.3
42.4
Minor 5ss
38.7
-1.3
2.9
47.6
48
Minor BPS
56.8
0.29
2
81.65
39.9

Associated Gene:

Gene:
ANGEL2
Ensembl Gene ID:
ENSAPLG00000011269
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024225
17755504 - 17773583
18080