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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17762144_17763869_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17762144 - 17763869
Intron Length:
1726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACGTTTT
5'SS Class:
major
3'SS Sequence:
TGACTCTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTTTCTTTGACT
Flanking Amino Acid:
DTKEIVRTSEKLSSKLRHHF
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
81.8
32.7
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
67.9
0.4
1
66.1
40.6
Minor 5ss
46.8
-0.3
3.1
66.7
38.6
Minor BPS
88.5
1.29
0.8
99.14
22.1

Associated Gene:

Gene:
ANGEL2
Ensembl Gene ID:
ENSAPLG00000011269
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024225
17755504 - 17773583
18080
ENSAPLT00000021130
17736993 - 17773583
36591
ENSAPLT00000011733
17760429 - 17771770
11342
ENSAPLT00000045168
17760616 - 17773583
12968
ENSAPLT00000036115
17757952 - 17773583
15632