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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17763931_17764437_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17763931 - 17764437
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTAAAAT
Flanking Amino Acid:
IKQQQKEENAGEKMEESKLN
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1.2
78.8
38.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
39.2
-1.2
2.8
49.7
46.6
Minor BPS
59.2
0.37
1.7
77.65
38.8

Associated Gene:

Gene:
ANGEL2
Ensembl Gene ID:
ENSAPLG00000011269
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024225
17755504 - 17773583
18080
ENSAPLT00000021130
17736993 - 17773583
36591
ENSAPLT00000011733
17760429 - 17771770
11342
ENSAPLT00000045168
17760616 - 17773583
12968
ENSAPLT00000036115
17757952 - 17773583
15632