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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17764565_17765525_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17764565 - 17765525
Intron Length:
961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAGAT
U12 Branch Point Sequence:
TCTGTATGAAAA
Flanking Amino Acid:
LNYEGLAIGKVSGQEQFPRG
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
65.3
0.38
1
60.7
37.6
Major PPT
81.1
0.7
0.8
81
31
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
46
-0.3
1.8
58.16
41.2

Associated Gene:

Gene:
ANGEL2
Ensembl Gene ID:
ENSAPLG00000011269
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024225
17755504 - 17773583
18080
ENSAPLT00000021130
17736993 - 17773583
36591
ENSAPLT00000011733
17760429 - 17771770
11342
ENSAPLT00000045168
17760616 - 17773583
12968
ENSAPLT00000036115
17757952 - 17773583
15632