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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17767744_17769506_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17767744 - 17769506
Intron Length:
1763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTGCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CATCTTTTAACT
Flanking Amino Acid:
LQEIKQLDADVLCLQEVQED
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
78.8
29.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
71.6
0.49
0.9
70
35.9
Minor 5ss
33
-1.9
2.7
39.4
38.9
Minor BPS
69.3
0.68
1.2
77.92
38.5

Associated Gene:

Gene:
ANGEL2
Ensembl Gene ID:
ENSAPLG00000011269
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036115
17757952 - 17773583
15632
ENSAPLT00000024225
17755504 - 17773583
18080
ENSAPLT00000021130
17736993 - 17773583
36591
ENSAPLT00000011733
17760429 - 17771770
11342
ENSAPLT00000045168
17760616 - 17773583
12968