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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17782232_17787589_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17782232 - 17787589
Intron Length:
5358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
TTTTGCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
AAGCACTTAACG
Flanking Amino Acid:
GHTVYKVTARIVSRKNPEDV
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
64.9
42.8
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
88.2
0.86
0.7
85.4
29.3
Minor 5ss
27.7
-2.6
2.7
23.9
36.9
Minor BPS
57.3
0.09
1.6
58.07
42.7

Associated Gene:

Gene:
RPS6KC1
Ensembl Gene ID:
ENSAPLG00000011098
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038908
17782127 - 17867791
85665
ENSAPLT00000035251
17782127 - 17867791
85665
ENSAPLT00000011587
17782127 - 17867791
85665