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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17788616_17792055_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17788616 - 17792055
Intron Length:
3440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
CACTCACTAATA
Flanking Amino Acid:
HELLISGLAEIVVWKRYSDF
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
82.9
0.74
0.8
80.8
31.3
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
48.1
-0.1
1.9
58.32
41.3

Associated Gene:

Gene:
RPS6KC1
Ensembl Gene ID:
ENSAPLG00000011098
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020984
17787590 - 17867791
80202