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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17792177_17798735_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17792177 - 17798735
Intron Length:
6559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TATTTCTAAAGC
Flanking Amino Acid:
FPPFAKAIVFGRFDETVIEE
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
74.5
41.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
76.5
0.6
1
73.1
42.1
Minor 5ss
43.1
-0.8
2.9
54.7
43.7
Minor BPS
57.4
0.21
2
70.71
40.9

Associated Gene:

Gene:
RPS6KC1
Ensembl Gene ID:
ENSAPLG00000011098
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020984
17787590 - 17867791
80202
ENSAPLT00000011587
17782127 - 17867791
85665
ENSAPLT00000038908
17782127 - 17867791
85665
ENSAPLT00000035251
17782127 - 17867791
85665