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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17801128_17805490_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
17801128 - 17805490
Intron Length:
4363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTGTCCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
GGATATCAAACA
Flanking Amino Acid:
TDNLSDCSSEVRKDLSGLDD
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.2
72.6
39.2
Major BPS
70.2
0.5
1
72.1
33
Major PPT
87
0.83
0.7
84.9
29.9
Minor 5ss
57.9
0.27
2.4
73.9
42.6
Minor BPS
42.4
-0.5
2
51.69
39.3

Associated Gene:

Gene:
RPS6KC1
Ensembl Gene ID:
ENSAPLG00000011098
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038908
17782127 - 17867791
85665
ENSAPLT00000035251
17782127 - 17867791
85665
ENSAPLT00000020984
17787590 - 17867791
80202
ENSAPLT00000011587
17782127 - 17867791
85665