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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17805551_17806380_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17805551 - 17806380
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATCT
5'SS Class:
strong_major
3'SS Sequence:
ACCATGCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TCTTTCTGACCA
Flanking Amino Acid:
VTLTSQSECGGFSSDSDLIS
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
70.5
0.46
1
65.5
40.4
Minor 5ss
35.1
-1.7
3.1
48.3
47.4
Minor BPS
58.8
0.27
1.8
71.44
41

Associated Gene:

Gene:
RPS6KC1
Ensembl Gene ID:
ENSAPLG00000011098
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020984
17787590 - 17867791
80202
ENSAPLT00000011587
17782127 - 17867791
85665
ENSAPLT00000038908
17782127 - 17867791
85665
ENSAPLT00000035251
17782127 - 17867791
85665