About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17842354_17849902_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17842354 - 17849902
Intron Length:
7549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTCTC
5'SS Class:
major
3'SS Sequence:
TCTTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAA
U12 Branch Point Sequence:
ATTTCCCCATTC
Flanking Amino Acid:
SVFLVLQHAEGGKLWSYVSK
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.2
70
40.5
Major BPS
66.7
0.42
1
58.1
38.5
Major PPT
89.7
0.89
0.6
84.8
22.9
Minor 5ss
41.2
-1
2.7
53.6
43.5
Minor BPS
47.8
-0.1
2.1
66.04
39.6

Associated Gene:

Gene:
RPS6KC1
Ensembl Gene ID:
ENSAPLG00000011098
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038908
17782127 - 17867791
85665
ENSAPLT00000035251
17782127 - 17867791
85665
ENSAPLT00000020984
17787590 - 17867791
80202
ENSAPLT00000011587
17782127 - 17867791
85665