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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_17863655_17864469_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17863655 - 17864469
Intron Length:
815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCTG
5'SS Class:
major
3'SS Sequence:
TATTTCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTATTT
Flanking Amino Acid:
AILFELLTGKTLVECHPSGI
Intron Amino Acid Position:
1015

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
64.3
47.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.9
0.65
0.8
70.6
35.8
Minor 5ss
33
-1.9
3.6
46.2
49.1
Minor BPS
64.2
0.52
1.5
78.46
39

Associated Gene:

Gene:
RPS6KC1
Ensembl Gene ID:
ENSAPLG00000011098
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038908
17782127 - 17867791
85665
ENSAPLT00000035251
17782127 - 17867791
85665
ENSAPLT00000020984
17787590 - 17867791
80202
ENSAPLT00000011587
17782127 - 17867791
85665