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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18077267_18089158_F

Intron Information:

Intron Rank:
131963
Intron Class:
major
Intron Phase:
Intron Coordinates:
18077267 - 18089158
Intron Length:
11892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTGTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAATCAGTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
73.4
37.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
67.5
0.39
1.1
70.5
39.1
Minor 5ss
39.7
-1.2
3.1
56
48.1
Minor BPS
56
0.27
2.3
79.7
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020852
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044833
18073516 - 18089332
15817
ENSAPLT00000037697
18075758 - 18098123
22366
ENSAPLT00000021286
18075758 - 18089300
13543