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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18124008_18126069_R

Intron Information:

Intron Rank:
128900
Intron Class:
major
Intron Phase:
Intron Coordinates:
18124008 - 18126069
Intron Length:
2062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATATCTT
5'SS Class:
major
3'SS Sequence:
TTTCCTCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TGTTAATTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
69.5
40.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
82
0.72
0.7
76.6
25.5
Minor 5ss
45.7
-0.4
3
64
42.7
Minor BPS
48.9
-0
2.2
75.07
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016488
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047726
18123190 - 18158852
35663
ENSAPLT00000035402
18123190 - 18129820
6631