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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18138820_18158262_R

Intron Information:

Intron Rank:
128902
Intron Class:
major
Intron Phase:
Intron Coordinates:
18138820 - 18158262
Intron Length:
19443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGGTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
100
1.24
0.5
100
0
Major PPT
79.9
0.67
0.8
74.8
34.7
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
49.8
0.07
1.8
70.08
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016488
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040010
18138062 - 18158852
20791