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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18306922_18309077_F

Intron Information:

Intron Rank:
147840
Intron Class:
major
Intron Phase:
Intron Coordinates:
18306922 - 18309077
Intron Length:
2156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TCACTCTGAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73
38.2
Major BPS
69.8
0.49
1
61
37.5
Major PPT
100
1.12
0.4
100
0
Minor 5ss
31
-2.2
3.3
41
45.6
Minor BPS
59.6
0.28
1.5
65.44
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029568
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045665
18306661 - 18309563
2903