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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18340582_18342232_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18340582 - 18342232
Intron Length:
1651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTATTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TCCTCCTTATTG
Flanking Amino Acid:
RLTARILAKQKTHPEKTQSE
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
70.7
0.47
1
65.7
40.1
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
61.5
0.22
1.7
62.57
46

Associated Gene:

Gene:
SMYD2
Ensembl Gene ID:
ENSAPLG00000010622
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024284
18330835 - 18356366
25532
ENSAPLT00000011094
18330835 - 18358558
27724