Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18344361_18347682_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18344361 - 18347682

Intron Length:

3322

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTTGG

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTTCCTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCTGAC

U12 Branch Point Sequence:

GCAGTCTGAGCT

Flanking Amino Acid:

NAALVVLFAQVNCNGFTIED

Intron Amino Acid Position:

293

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

72.5

39.9

Major BPS

57.5

0.19

1.1

48.8

38.1

Major PPT

84.5

0.78

0.6

84.9

22.8

Minor 5ss

41.3

-1

2.8

49.6

Minor BPS

45.8

-0.2

1.8

57.99

44.6

Associated Gene:

Gene:

SMYD2

Ensembl Gene ID:

ENSAPLG00000010622

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024284

18330835 - 18356366

25532

ENSAPLT00000011094

18330835 - 18358558

27724