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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18349619_18351922_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18349619 - 18351922
Intron Length:
2304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTGTTTTTACT
Flanking Amino Acid:
AVREIEPGEEVFTSYIDLLY
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77
0.61
0.9
70.2
41
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
57.2
0.31
1.7
75.76
41.1

Associated Gene:

Gene:
SMYD2
Ensembl Gene ID:
ENSAPLG00000010622
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024284
18330835 - 18356366
25532
ENSAPLT00000011094
18330835 - 18358558
27724