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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18356049_18358151_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
18356049 - 18358151
Intron Length:
2103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATCTCCT
5'SS Class:
weak_major
3'SS Sequence:
TTTCTTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TTTCTTTTCATA
Flanking Amino Acid:
RPAGVKALKRAIAIMEVAHG
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64
0.33
1.2
58.9
45.7
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
86.7
0.82
0.6
83.7
24.6
Minor 5ss
48.1
-0.2
2.5
60
44.4
Minor BPS
57
0.21
1.7
71.66
34.9

Associated Gene:

Gene:
SMYD2
Ensembl Gene ID:
ENSAPLG00000010622
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011094
18330835 - 18358558
27724