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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18366570_18371486_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18366570 - 18371486
Intron Length:
4917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCAAG
5'SS Class:
major
3'SS Sequence:
CTTTACTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TTCTCCTTTACT
Flanking Amino Acid:
LMIGCLEHNEKVDVPVMLRH
Intron Amino Acid Position:
1150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
71.6
40.1
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
86.2
0.81
0.8
80
31.7
Minor 5ss
40.4
-1.1
2.9
49
41.4
Minor BPS
79.4
1.01
1.5
92.36
36.7

Associated Gene:

Gene:
PTPN14
Ensembl Gene ID:
ENSAPLG00000010016
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010475
18365982 - 18433365
67384