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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18371651_18372226_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18371651 - 18372226
Intron Length:
576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
TGTGTTTTACCC
Flanking Amino Acid:
GCPEEVQGFLSYLEEIQSVR
Intron Amino Acid Position:
1095

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
86.6
28.3
Major BPS
71.4
0.53
1
67
39.8
Major PPT
84.4
0.77
0.8
78.4
30.1
Minor 5ss
41.8
-0.9
3.2
63.2
41.1
Minor BPS
54.6
0.12
1.7
65.82
40.4

Associated Gene:

Gene:
PTPN14
Ensembl Gene ID:
ENSAPLG00000010016
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010475
18365982 - 18433365
67384