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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18373579_18377534_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18373579 - 18377534
Intron Length:
3956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTACTT
Flanking Amino Acid:
TGYINASHIKVTVGGEEWHY
Intron Amino Acid Position:
974

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
33.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.9
0.9
0.7
82.1
34.6
Minor 5ss
32.4
-2
3.5
48.3
47.4
Minor BPS
65
0.55
1.5
80
36.6

Associated Gene:

Gene:
PTPN14
Ensembl Gene ID:
ENSAPLG00000010016
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010475
18365982 - 18433365
67384