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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18382520_18384095_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18382520 - 18384095
Intron Length:
1576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCTACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ACATCTTTATCT
Flanking Amino Acid:
EHYTETHNSQDSIFHGNEET
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.2
38.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
70.1
0.45
0.9
64.7
35.6
Minor 5ss
34
-1.8
2.9
42.9
44
Minor BPS
63.7
0.51
1.6
74.9
42.1

Associated Gene:

Gene:
PTPN14
Ensembl Gene ID:
ENSAPLG00000010016
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010475
18365982 - 18433365
67384