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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18384175_18387039_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18384175 - 18387039
Intron Length:
2865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTACC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
GCTTCTTTAACC
Flanking Amino Acid:
RRPTWSRSSLPRQHPFILPP
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
73.3
35.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
84
0.76
0.8
81.4
34.9
Minor 5ss
43.2
-0.7
2.4
52.2
38.7
Minor BPS
79.4
0.9
1.1
78.83
36.8

Associated Gene:

Gene:
PTPN14
Ensembl Gene ID:
ENSAPLG00000010016
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010475
18365982 - 18433365
67384