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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18391903_18393658_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18391903 - 18393658
Intron Length:
1756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TCTTTATTAAAC
Flanking Amino Acid:
GFGQETFPVKDNHGNDIHLG
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
70.6
41.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
83.3
0.75
0.9
79.6
32.3
Minor 5ss
39.7
-1.2
2.8
49
47.2
Minor BPS
62.1
0.36
1.7
72.41
38.4

Associated Gene:

Gene:
PTPN14
Ensembl Gene ID:
ENSAPLG00000010016
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010475
18365982 - 18433365
67384