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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18393747_18395503_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18393747 - 18395503
Intron Length:
1757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
ATTCCAATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
CTTTTGTTATTC
Flanking Amino Acid:
QKVAQEHRTHSGITAAEAEL
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
38.1
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
74.9
0.56
0.9
67.5
37.3
Minor 5ss
42
-0.9
3
55
49.2
Minor BPS
48.5
-0.1
2.2
64.92
41.8

Associated Gene:

Gene:
PTPN14
Ensembl Gene ID:
ENSAPLG00000010016
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010475
18365982 - 18433365
67384