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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18401161_18425432_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18401161 - 18425432
Intron Length:
24272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGGTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CCTTTCTGATCT
Flanking Amino Acid:
SVSRLQQEVTRYQYYLQVKK
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.1
36.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78.1
0.63
0.9
72.8
37.5
Minor 5ss
38.1
-1.3
3.1
49.4
46.8
Minor BPS
54.8
0.23
1.8
71.9
45.2

Associated Gene:

Gene:
PTPN14
Ensembl Gene ID:
ENSAPLG00000010016
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010475
18365982 - 18433365
67384