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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18425603_18433040_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18425603 - 18433040
Intron Length:
7438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTATCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GTTTCTTTATCT
Flanking Amino Acid:
AVAQRLELRETHYFGLWFLS
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
84.3
26.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
83.3
0.75
0.8
77.9
35.6
Minor 5ss
34
-1.8
3.5
46.9
48.4
Minor BPS
74.4
0.84
1.5
88.63
36.3

Associated Gene:

Gene:
PTPN14
Ensembl Gene ID:
ENSAPLG00000010016
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010475
18365982 - 18433365
67384