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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18484330_18485696_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
18484330 - 18485696
Intron Length:
1367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGAA
5'SS Class:
major
3'SS Sequence:
GTATTCCTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTATTCCTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
67.8
0.4
1
63.3
38.1
Minor 5ss
28.6
-2.5
3.5
37.7
47.1
Minor BPS
60.2
0.32
1.6
69.53
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009924
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038477
18483859 - 18522420
38562
ENSAPLT00000017423
18483859 - 18522420
38562
ENSAPLT00000010344
18484125 - 18521210
37086