Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18485895_18487632_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18485895 - 18487632

Intron Length:

1738

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGACT

5'SS Class:

strong_major

3'SS Sequence:

CTTTCCTAAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTAAT

U12 Branch Point Sequence:

CTTTCCTAAACA

Flanking Amino Acid:

EIERLEQELKRYKCELERSQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.5

0.88

0.8

81.2

32.3

Major BPS

76.6

0.66

1.1

75.9

36.3

Major PPT

73.9

0.54

0.9

70.1

34.1

Minor 5ss

29.5

-2.4

3.1

40.4

45.5

Minor BPS

75.1

0.78

1.6

83.03

38.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009924

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038477

18483859 - 18522420

38562

ENSAPLT00000017423

18483859 - 18522420

38562

ENSAPLT00000010344

18484125 - 18521210

37086