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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18487749_18489262_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18487749 - 18489262
Intron Length:
1514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATGAA
5'SS Class:
major
3'SS Sequence:
CATGTCTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AAGTATTTATCA
Flanking Amino Acid:
APLTPVQSHNDAKFEELEEK
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
72.7
31.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.5
0.57
0.9
69.6
36.3
Minor 5ss
31.5
-2.1
3.2
36.7
42.9
Minor BPS
49.8
-0
1.7
59.83
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009924
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010344
18484125 - 18521210
37086
ENSAPLT00000038477
18483859 - 18522420
38562
ENSAPLT00000017423
18483859 - 18522420
38562