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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18490264_18492073_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18490264 - 18492073
Intron Length:
1810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGGTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAGGAT
U12 Branch Point Sequence:
TTTTTGGTCACA
Flanking Amino Acid:
RPTNCLLFVKKINQPYPQQS
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
80.3
34.3
Major BPS
51.9
0.05
1.4
51.7
43.9
Major PPT
81.2
0.7
0.9
75.8
38.1
Minor 5ss
35.2
-1.7
3.1
49.5
46.7
Minor BPS
44.1
-0.4
2.8
70.02
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009924
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025653
18490082 - 18522420
32339