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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18492345_18493755_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18492345 - 18493755
Intron Length:
1411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTGGT
5'SS Class:
major
3'SS Sequence:
TTTTAAAATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTATCTTAACT
Flanking Amino Acid:
LITPLRAQNQELNSSVKDLE
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.2
68.8
42.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.3
0.57
1
72.3
41.5
Minor 5ss
46
-0.4
3
67.3
43.8
Minor BPS
85.5
1.19
1
96.55
28.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009924
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010344
18484125 - 18521210
37086
ENSAPLT00000038477
18483859 - 18522420
38562
ENSAPLT00000025653
18490082 - 18522420
32339
ENSAPLT00000017423
18483859 - 18522420
38562