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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18496116_18498295_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18496116 - 18498295
Intron Length:
2180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
CACTGTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTCTTTGATA
Flanking Amino Acid:
IKAKEKEYQEELACQQRSLQ
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
64.3
47.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
70.5
0.46
0.9
61.8
39.7
Minor 5ss
30.2
-2.3
3.2
38.6
46.5
Minor BPS
76.3
0.82
1
80.1
28.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009924
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038477
18483859 - 18522420
38562
ENSAPLT00000025653
18490082 - 18522420
32339
ENSAPLT00000017423
18483859 - 18522420
38562
ENSAPLT00000010344
18484125 - 18521210
37086
ENSAPLT00000046668
18494996 - 18522420
27425