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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18500116_18503424_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18500116 - 18503424
Intron Length:
3309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CCTTCTTTATTT
Flanking Amino Acid:
KESDLTRSFEEVKQEKNLLD
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1.1
87
30
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89
0.88
0.7
88.9
28.2
Minor 5ss
42.9
-0.8
2.7
59.7
44.8
Minor BPS
63
0.49
1.6
74.81
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009924
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025653
18490082 - 18522420
32339
ENSAPLT00000017423
18483859 - 18522420
38562
ENSAPLT00000046668
18494996 - 18522420
27425
ENSAPLT00000010344
18484125 - 18521210
37086
ENSAPLT00000038477
18483859 - 18522420
38562
ENSAPLT00000025972
18499996 - 18521210
21215