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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18503561_18504689_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18503561 - 18504689
Intron Length:
1129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTGAT
U12 Branch Point Sequence:
TTTCTGTTTACA
Flanking Amino Acid:
QSQNFAEEMKNKNVFQEAEL
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
82.9
23.9
Major BPS
72.4
0.56
1.2
63.1
44.4
Major PPT
88.9
0.88
0.7
83.5
31.6
Minor 5ss
38.1
-1.3
3
49.4
41.3
Minor BPS
49.8
-0
2.3
72.36
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009924
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025972
18499996 - 18521210
21215
ENSAPLT00000025653
18490082 - 18522420
32339
ENSAPLT00000046668
18494996 - 18522420
27425
ENSAPLT00000017423
18483859 - 18522420
38562
ENSAPLT00000038477
18483859 - 18522420
38562
ENSAPLT00000010344
18484125 - 18521210
37086