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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18511301_18511864_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18511301 - 18511864
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACCA
5'SS Class:
major
3'SS Sequence:
AATTTCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTTAAATAAAA
Flanking Amino Acid:
LCEKTALSKKVNELTESCVE
Intron Amino Acid Position:
2153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.2
38
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.1
0.65
0.9
75.3
38.6
Minor 5ss
32.3
-2
3
40.9
44.8
Minor BPS
46.7
-0.2
2.1
65.52
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009924
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038477
18483859 - 18522420
38562
ENSAPLT00000025653
18490082 - 18522420
32339
ENSAPLT00000017423
18483859 - 18522420
38562
ENSAPLT00000010344
18484125 - 18521210
37086
ENSAPLT00000046668
18494996 - 18522420
27425