About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18511301_18513148_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18511301 - 18513148
Intron Length:
1848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACCA
5'SS Class:
major
3'SS Sequence:
TTACTGTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTCTATTACT
Flanking Amino Acid:
LCEKTALSKKTQLHITMSEK
Intron Amino Acid Position:
1776

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.2
38
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
79
0.65
0.9
77.3
36.7
Minor 5ss
32.3
-2
3
40.9
44.8
Minor BPS
59.5
0.38
1.9
82.04
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009924
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025972
18499996 - 18521210
21215