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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18513326_18514205_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18513326 - 18514205
Intron Length:
880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
ATCATAGTAATT
Flanking Amino Acid:
QDALTEANRKNEMQIEACQD
Intron Amino Acid Position:
2263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
71.2
40.6
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
81.7
0.71
0.8
74.4
36.5
Minor 5ss
32.9
-1.9
3
40.4
45.7
Minor BPS
44.6
-0.3
2.2
63.46
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009924
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046668
18494996 - 18522420
27425
ENSAPLT00000025653
18490082 - 18522420
32339
ENSAPLT00000017423
18483859 - 18522420
38562