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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18514368_18515857_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18514368 - 18515857
Intron Length:
1490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTATTT
Flanking Amino Acid:
QTLGELLNLQINNGNIIVQL
Intron Amino Acid Position:
2317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.2
0.88
0.7
85.8
27.5
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
65.4
0.56
1.5
80.16
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009924
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025653
18490082 - 18522420
32339
ENSAPLT00000017423
18483859 - 18522420
38562
ENSAPLT00000046668
18494996 - 18522420
27425