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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18517203_18518302_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18517203 - 18518302
Intron Length:
1100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTAGA
5'SS Class:
major
3'SS Sequence:
GTTCATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
CTGTGTTTAATA
Flanking Amino Acid:
PDGLPEVVRKGFADIPTGKV
Intron Amino Acid Position:
2533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.5
38.4
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
82
0.72
0.9
73.1
41.8
Minor 5ss
41.3
-1
2.5
51.9
44.5
Minor BPS
58.5
0.26
1.8
66.12
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009924
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025972
18499996 - 18521210
21215
ENSAPLT00000025653
18490082 - 18522420
32339
ENSAPLT00000017423
18483859 - 18522420
38562
ENSAPLT00000046668
18494996 - 18522420
27425
ENSAPLT00000038477
18483859 - 18522420
38562