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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18518491_18521129_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18518491 - 18521129
Intron Length:
2639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
TGAAACAAAACA
Flanking Amino Acid:
STPGGSKSQKVNGEQQPQAG
Intron Amino Acid Position:
2386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.1
25.8
Major BPS
64.7
0.37
1
73
31.5
Major PPT
79.3
0.66
1
72.9
42.2
Minor 5ss
39.6
-1.2
2.8
49.5
46.6
Minor BPS
43.8
-0.4
2
56.36
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009924
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017423
18483859 - 18522420
38562
ENSAPLT00000046668
18494996 - 18522420
27425
ENSAPLT00000010344
18484125 - 18521210
37086
ENSAPLT00000038477
18483859 - 18522420
38562
ENSAPLT00000025972
18499996 - 18521210
21215
ENSAPLT00000025653
18490082 - 18522420
32339