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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18538862_18538973_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18538862 - 18538973
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTACT
5'SS Class:
major
3'SS Sequence:
TTTAATCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTGCTTTTAATC
Flanking Amino Acid:
VSNEKETELHSFIEDAHVRP
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
77.5
37.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.7
0.76
0.8
77.6
36.3
Minor 5ss
37.4
-1.4
3
52.9
43.6
Minor BPS
61.5
0.34
1.2
63.68
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026344
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019019
18524308 - 18574924
50617