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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18541200_18554253_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18541200 - 18554253
Intron Length:
13054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTACATGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTGTGTTTACAT
Flanking Amino Acid:
APKSLHTSVKYKDQQKRDKL
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
85.2
25.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
75.6
0.58
1
70
40.3
Minor 5ss
36.3
-1.6
2.9
46.9
41.8
Minor BPS
49.1
0.01
2.1
72.41
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026344
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019019
18524308 - 18574924
50617