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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18557333_18561974_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18557333 - 18561974
Intron Length:
4642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
ACTGAATGAACT
Flanking Amino Acid:
FRGHLSLKSSIFSPGSSCKF
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
62
0.3
1
53
34.1
Major PPT
88.5
0.87
0.7
83.8
24.3
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
46.5
-0.1
2
65.68
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026344
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019019
18524308 - 18574924
50617