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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18562049_18574572_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18562049 - 18574572
Intron Length:
12524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTACCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCATAT
U12 Branch Point Sequence:
TCATATGTAACC
Flanking Amino Acid:
MRCQITTVPTY
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.2
1.14
0.6
93.2
14.5
Major BPS
74.2
0.6
1
69.3
38.4
Major PPT
63.3
0.3
1
63.7
30.2
Minor 5ss
43.8
-0.7
2.8
58.1
46.5
Minor BPS
49
-0
2.2
63.7
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026344
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019019
18524308 - 18574924
50617