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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_18575877_18576965_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
18575877 - 18576965
Intron Length:
1089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGAGCAA
5'SS Class:
major
3'SS Sequence:
TTTCTCCTATCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTTTTAAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
59.1
41.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.8
0.74
0.8
82.5
27.8
Minor 5ss
28
-2.5
3.5
37.4
47.3
Minor BPS
64.7
0.46
1.6
73.92
38.7

Associated Gene:

Gene:
KCNK2
Ensembl Gene ID:
ENSAPLG00000009845
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041429
18575758 - 18704220
128463